| 3000 meter | 4:14.05 | Kunihiko Kondo (Neo) | 18.01.2009 |
| 1500 meter | 2:25.19 | Haruka Chiba (Neo) | 18.01.2009 |
| 3000 meter | 4:13.36 | Nobumitsu Kuroiwa (Neo) | 18.01.2009 |
| Team Pursuit | 4:12.41 | Kouki Saiki (Neo) Masaki Hayashi (Neo) | 18.01.2009 |
| 3000 meter | 4:10.66 | Yuudai Nakayama (Neo) | 18.01.2009 |
| Team Pursuit | 4:09.58 | Nobumitsu Kuroiwa (Neo) Yasunari Kuroiwa (Neo) Keisuke Yoshimoto (Neo) | 18.01.2009 |
| Team Pursuit | 4:09.51 | Yuudai Nakayama (Neo) Masaya Kaneso (Neo) Yuusuke.88 Shimizu (Neo) | 18.01.2009 |
| Team Pursuit | 4:07.60 | Kentaro Kaneko (Neo) Takuya Akamoto (Neo) Yuuta Kiyama (A2) | 18.01.2009 |
| Team Pursuit | 4:07.26 | Shouta Ono (A2) | 18.01.2009 |
| Team Pursuit | 4:06.56 | Yasuyuki Ono (Neo) Toshiyuki Sayama (Neo) Tsubasa Minoda (Neo) | 18.01.2009 |
| Team Pursuit | 3:51.88 | Misato Kubota (Neo) Haruka Motomiya (Neo) Yumi Kojima (Neo) | 18.01.2009 |
| Team Pursuit | 3:32.42 | Sanae Oogaki (Neo) | 18.01.2009 |
| Team Pursuit | 3:22.42 | Arisa Go (Neo) Minami Oota (Neo) Mitsuha Matsuoka (Neo) | 18.01.2009 |
| 1500 meter | 2:38.27 | Kazumasa Kuwabata (n/a) | 18.01.2009 |
| 5000 meter | 8:08.26 | Manabu Horiguchi (A2) | 17.01.2009 |
| 3000 meter | 4:17.17 | Kazuya Matsumoto (Neo) | 18.01.2009 |
| Team Pursuit | 4:24.88 | Takaaki Dounoshita (A2) Takumu Yoshikura (Neo) Akira Kanehama (Neo) | 18.01.2009 |
| 3000 meter | 4:25.60 | Shingo Tsuchiya (Neo) | 18.01.2009 |
| 3000 meter | 4:25.80 | Yasuyuki Sasaki (Neo) | 18.01.2009 |
| 3000 meter | 4:25.83 | Hiroaki Hara (A2) | 18.01.2009 |
| 3000 meter | 4:33.36 | Ryuuhei Akutsu (Neo) | 18.01.2009 |
| Team Pursuit | 4:41.36 | Kiyoto Yanagisawa (Neo) | 18.01.2009 |
| 3000 meter | 4:42.23 | Kiyoto Yanagisawa (Neo) | 18.01.2009 |
| 3000 meter | 5:04.01 | Miyu Kigasawa (Neo) | 17.01.2009 |
| 3000 meter | 5:25.61 | Misato Kubota (Neo) | 17.01.2009 |
| 3000 meter | 5:41.78 | Kazumasa Kuwabata (n/a) | 18.01.2009 |
| 3000 meter | 5:48.45 | Saori Kakuta (Neo) | 17.01.2009 |
| 5000 meter | 7:34.45 | Takaaki Dounoshita (A2) | 17.01.2009 |
| 5000 meter | 7:41.98 | Tatsuya Yamada (A2) | 17.01.2009 |
| 5000 meter | 7:43.15 | Yasuyuki Sasaki (Neo) | 17.01.2009 |
| 1500 meter | 2:16.59 | Takuya Kasugai (Neo) | 18.01.2009 |
| 500 meter | 38.02 | Yuugo Sasaki (Neo) | 17.01.2009 |
| 500 meter | 40.04 | Kousuke.89 Miyoshi (Neo) | 17.01.2009 |
| 500 meter | 42.58 | Aya Itane (Neo) | 17.01.2009 |
| 500 meter | 45.50 | Yukino Kuroiwa (Neo) | 17.01.2009 |
| 500 meter | 52.41 | Saori Kakuta (Neo) | 17.01.2009 |
| 1000 meter | 1:37.38 | Haruka Motomiya (Neo) | 17.01.2009 |
| 1000 meter | 1:42.07 | Yumi Kojima (Neo) | 17.01.2009 |
| 1500 meter | 2:02.42 | Shouta Miyamura (Neo) | 18.01.2009 |
| 1500 meter | 2:03.20 | Takayuki Numazaki (Neo) | 18.01.2009 |
| 1500 meter | 2:03.39 | Taishi Itoigawa (A2) | 18.01.2009 |
| 1500 meter | 2:04.20 | Akira Kanehama (Neo) | 18.01.2009 |
| 1500 meter | 2:04.72 | Yoshinao Azuma (Neo) | 18.01.2009 |
| 1500 meter | 2:07.44 | Yuugo Sasaki (Neo) | 18.01.2009 |
| 1500 meter | 2:12.81 | Reika Shimizu (A2) | 18.01.2009 |